3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08054

Details:

PFam ID : PF08054

PFam Domain Description : Leucine operon leader peptide

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 10

Average sequence length: 24.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08054	C5WUN0_SORBI_104_267	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08054	Q32K19_SHIDS_1_27	88

Sequence based PCA Plot of the family - PF08054 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay