3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08050

Details:

PFam ID : PF08050

PFam Domain Description : Tetracycline resistance leader peptide

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 9

Average sequence length: 17.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08050	C5WUN0_SORBI_104_267	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08050	B4EWB1_PROMH_1_32	100

Sequence based PCA Plot of the family - PF08050 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=4 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay