3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08048

Details:

PFam ID : PF08048

PFam Domain Description : Tap RepA1 leader peptide

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 8

Average sequence length: 21.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08048	C5WUN0_SORBI_104_267	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08048	A6M3Q1_YERPE_1_24	100

Sequence based PCA Plot of the family - PF08048 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay