3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08045

Details:

PFam ID : PF08045

PFam Domain Description : Cell division control protein 14, SIN component

Number of Sequence in 50% Dataset : 26

Number of Sequence in Full Dataset : 74

Average sequence length: 237.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08045	C5WUN0_SORBI_104_267	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08045	A3LT15_PICST_1_269	100

Sequence based PCA Plot of the family - PF08045 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=170 Length=8
Motif3 Start=70 Length=8
Motif4 Start=116 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay