3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08044

Details:

PFam ID : PF08044

PFam Domain Description : Domain of unknown function (DUF1707)

Number of Sequence in 50% Dataset : 16

Number of Sequence in Full Dataset : 294

Average sequence length: 52.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08044	Q5QX17_IDILO_12_59	60

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08044	C3PHS7_CORA7_6_58	100

Sequence based PCA Plot of the family - PF08044 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=38 Length=8
Motif2 Start=22 Length=11
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay