3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08038

Details:

PFam ID : PF08038

PFam Domain Description : TOM7 family

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 94

Average sequence length: 40.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08038	Q24BQ1_TETTH_864_894	83.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08038	F2U8B0_9EUKA_7_47	100

Sequence based PCA Plot of the family - PF08038 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay