3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08035

Details:

PFam ID : PF08035

PFam Domain Description : Opioids neuropeptide

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 41

Average sequence length: 27.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08035	E5RT38_CYNPY_209_226	25

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08035	E5RT38_CYNPY_209_226	100

Sequence based PCA Plot of the family - PF08035 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay