3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08031

Details:

PFam ID : PF08031

PFam Domain Description : Berberine and berberine like

Number of Sequence in 50% Dataset : 34

Number of Sequence in Full Dataset : 1111

Average sequence length: 47.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08031	A1DKC6_NEOFI_403_469	90.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08031	C7ZE61_NECH7_375_446	100

Sequence based PCA Plot of the family - PF08031 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=20 Length=8
Motif2 Start=2 Length=17
Motif3 Start=46 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay