3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08030

Details:

PFam ID : PF08030

PFam Domain Description : Ferric reductase NAD binding domain

Number of Sequence in 50% Dataset : 381

Number of Sequence in Full Dataset : 957

Average sequence length: 169.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08030	Q6C0I9_YARLI_399_603	97.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08030	Q1EMS3_PLAMJ_42_171	99.7

Sequence based PCA Plot of the family - PF08030 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=7 Length=17
Motif2 Start=75 Length=8
Motif3 Start=281 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay