3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08029

Details:

PFam ID : PF08029

PFam Domain Description : HisG, C-terminal domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 458

Average sequence length: 75.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08029	Q9S762_ARATH_307_394	56.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08029	C7NG12_KYTSD_223_303	100

Sequence based PCA Plot of the family - PF08029 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=14 Length=18
Motif2 Start=5 Length=8
Motif3 Start=69 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay