3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08028

Details:

PFam ID : PF08028

PFam Domain Description : Acyl-CoA dehydrogenase, C-terminal domain

Number of Sequence in 50% Dataset : 202

Number of Sequence in Full Dataset : 962

Average sequence length: 132.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08028	A7BKH4_9GAMM_2_54	90.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08028	F0G4C1_9BURK_1_63	100

Sequence based PCA Plot of the family - PF08028 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=27 Length=8
Motif2 Start=18 Length=8
Motif3 Start=9 Length=8
Motif4 Start=143 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay