3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08027

Details:

PFam ID : PF08027

PFam Domain Description : Albumin I

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 29

Average sequence length: 85.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08027	Q6A1C5_CARAB_1_58	66.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08027	Q6A1C9_ONOVI_10_98	100

Sequence based PCA Plot of the family - PF08027 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=44 Length=8
Motif4 Start=32 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay