3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08024

Details:

PFam ID : PF08024

PFam Domain Description : Ant antimicrobial peptide

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 7

Average sequence length: 20

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08024	PCW4_PACGO_3_26	50

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08024	PCW2_PACGO_2_25	100

Sequence based PCA Plot of the family - PF08024 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay