3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08023

Details:

PFam ID : PF08023

PFam Domain Description : Frog antimicrobial peptide

Number of Sequence in 50% Dataset : 5

Number of Sequence in Full Dataset : 159

Average sequence length: 31.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08023	C3JFC0_RHOER_1_164	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08023	RN1C_RANCL_1_25	85

Sequence based PCA Plot of the family - PF08023 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay