3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08022

Details:

PFam ID : PF08022

PFam Domain Description : FAD-binding domain

Number of Sequence in 50% Dataset : 246

Number of Sequence in Full Dataset : 1054

Average sequence length: 106.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08022	C3JFC0_RHOER_1_164	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08022	E7PWZ4_STRDY_50_244	100

Sequence based PCA Plot of the family - PF08022 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=16 Length=17
Motif2 Start=1 Length=8
Motif3 Start=52 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay