3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08018

Details:

PFam ID : PF08018

PFam Domain Description : Frog antimicrobial peptide

Number of Sequence in 50% Dataset : 6

Number of Sequence in Full Dataset : 81

Average sequence length: 23.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08018	C3YFK1_BRAFL_70_340	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08018	E1B245_9NEOB_47_63	87

Sequence based PCA Plot of the family - PF08018 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay