3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08014

Details:

PFam ID : PF08014

PFam Domain Description : Domain of unknown function (DUF1704)

Number of Sequence in 50% Dataset : 33

Number of Sequence in Full Dataset : 99

Average sequence length: 329.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08014	A0E388_PARTE_136_421	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08014	Q12RI6_SHEDO_39_416	100

Sequence based PCA Plot of the family - PF08014 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=113 Length=8
Motif2 Start=196 Length=8
Motif3 Start=215 Length=8
Motif4 Start=135 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay