3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08013

Details:

PFam ID : PF08013

PFam Domain Description : Tagatose 6 phosphate kinase

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 145

Average sequence length: 389.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08013	E6WN73_PANSA_1_197	82.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08013	E1R0X8_SPISS_1_435	100

Sequence based PCA Plot of the family - PF08013 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=28
Motif2 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay