3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08008

Details:

PFam ID : PF08008

PFam Domain Description : Viral cysteine rich

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 33

Average sequence length: 78.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08008	B7S8C1_9HYME_19_93	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08008	O11874_CSIV_109_194	100

Sequence based PCA Plot of the family - PF08008 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=31 Length=18
Motif2 Start=13 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay