3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF08007

Details:

PFam ID : PF08007

PFam Domain Description : Cupin superfamily protein

Number of Sequence in 50% Dataset : 174

Number of Sequence in Full Dataset : 530

Average sequence length: 268.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08007	B0G8A8_9FIRM_1_222	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF08007	Q1D4G2_MYXXD_12_350	99.8

Sequence based PCA Plot of the family - PF08007 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=4 Length=17
Motif2 Start=180 Length=8
Motif3 Start=147 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay