3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07996

Details:

PFam ID : PF07996

PFam Domain Description : Type IV secretion system proteins

Number of Sequence in 50% Dataset : 89

Number of Sequence in Full Dataset : 197

Average sequence length: 187.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07996	C6RJZ4_ACIRA_218_408	78.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07996	B4RHX9_PHEZH_25_232	100

Sequence based PCA Plot of the family - PF07996 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=157 Length=8
Motif3 Start=6 Length=8
Motif4 Start=141 Length=14

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay