3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07995

Details:

PFam ID : PF07995

PFam Domain Description : Glucose / Sorbosone dehydrogenase

Number of Sequence in 50% Dataset : 297

Number of Sequence in Full Dataset : 1526

Average sequence length: 300.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07995	B0EHW2_ENTDI_147_510	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07995	A9BWD2_DELAS_11_71	100

Sequence based PCA Plot of the family - PF07995 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=54 Length=14
Motif2 Start=227 Length=11
Motif3 Start=401 Length=11
Motif4 Start=265 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay