3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07994

Details:

PFam ID : PF07994

PFam Domain Description : Myo-inositol-1-phosphate synthase

Number of Sequence in 50% Dataset : 40

Number of Sequence in Full Dataset : 414

Average sequence length: 362.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07994	B0EHW2_ENTDI_147_510	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07994	Q8I3Y8_PLAF7_80_587	100

Sequence based PCA Plot of the family - PF07994 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=2 Length=8
Motif3 Start=76 Length=8
Motif4 Start=319 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay