3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07993

Details:

PFam ID : PF07993

PFam Domain Description : Male sterility protein

Number of Sequence in 50% Dataset : 516

Number of Sequence in Full Dataset : 1623

Average sequence length: 228.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07993	B0EHW2_ENTDI_147_510	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07993	Q4TIM0_TETNG_1_65	99.8

Sequence based PCA Plot of the family - PF07993 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=2 Length=17
Motif2 Start=25 Length=8
Motif3 Start=332 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay