3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07991

Details:

PFam ID : PF07991

PFam Domain Description : Acetohydroxy acid isomeroreductase, catalytic domain

Number of Sequence in 50% Dataset : 29

Number of Sequence in Full Dataset : 863

Average sequence length: 162.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07991	C5XPQ8_SORBI_314_721	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07991	D5GI77_TUBMM_14_184	100

Sequence based PCA Plot of the family - PF07991 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=5 Length=17
Motif2 Start=41 Length=8
Motif3 Start=84 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay