3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07990

Details:

PFam ID : PF07990

PFam Domain Description : Nucleic acid binding protein NABP

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 45

Average sequence length: 287.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07990	C5XPQ8_SORBI_314_721	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07990	C5XPQ8_SORBI_314_721	100

Sequence based PCA Plot of the family - PF07990 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=394 Length=8
Motif2 Start=257 Length=8
Motif3 Start=3 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay