3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07988

Details:

PFam ID : PF07988

PFam Domain Description : LMSTEN motif

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 14

Average sequence length: 42.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07988	C9YF07_9BURK_19_98	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07988	E7FFJ6_DANRE_243_288	100

Sequence based PCA Plot of the family - PF07988 :

BRP of Green color is by FASSM and of Red color is by HMMER

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay