3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07987

Details:

PFam ID : PF07987

PFam Domain Description : Domain of unkown function (DUF1775)

Number of Sequence in 50% Dataset : 28

Number of Sequence in Full Dataset : 175

Average sequence length: 136.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07987	C9YF07_9BURK_19_98	85.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07987	C5TA22_ACIDE_31_179	100

Sequence based PCA Plot of the family - PF07987 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=16 Length=28

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay