3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07983

Details:

PFam ID : PF07983

PFam Domain Description : X8 domain

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 583

Average sequence length: 72.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07983	C5JDB5_AJEDS_395_429	84.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07983	F0X1U3_9STRA_539_605	100

Sequence based PCA Plot of the family - PF07983 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=18 Length=8
Motif3 Start=35 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay