3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07977

Details:

PFam ID : PF07977

PFam Domain Description : FabA-like domain

Number of Sequence in 50% Dataset : 161

Number of Sequence in Full Dataset : 1578

Average sequence length: 122.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07977	D7AEZ7_GEOSK_45_121	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07977	D5SU84_PLAL2_2125_2267	100

Sequence based PCA Plot of the family - PF07977 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=17
Motif2 Start=75 Length=11
Motif3 Start=45 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay