3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07975

Details:

PFam ID : PF07975

PFam Domain Description : TFIIH C1-like domain

Number of Sequence in 50% Dataset : 9

Number of Sequence in Full Dataset : 122

Average sequence length: 53.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07975	C5FIA5_ARTOC_348_450	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07975	E3KWU2_PUCGT_397_462	100

Sequence based PCA Plot of the family - PF07975 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=2 Length=17
Motif2 Start=49 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay