3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07974

Details:

PFam ID : PF07974

PFam Domain Description : EGF-like domain

Number of Sequence in 50% Dataset : 4

Number of Sequence in Full Dataset : 619

Average sequence length: 31.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07974	F2JJV4_9FIRM_184_238	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07974	F1PW87_CANFA_1_22	100

Sequence based PCA Plot of the family - PF07974 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=15 Length=8
Motif2 Start=6 Length=8
Motif3 Start=25 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay