3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07973

Details:

PFam ID : PF07973

PFam Domain Description : Threonyl and Alanyl tRNA synthetase second additional domain

Number of Sequence in 50% Dataset : 14

Number of Sequence in Full Dataset : 2515

Average sequence length: 48.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07973	F2JJV4_9FIRM_184_238	38.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07973	F2JJV4_9FIRM_184_238	100

Sequence based PCA Plot of the family - PF07973 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=15 Length=32
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay