3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07971

Details:

PFam ID : PF07971

PFam Domain Description : Glycosyl hydrolase family 92

Number of Sequence in 50% Dataset : 167

Number of Sequence in Full Dataset : 810

Average sequence length: 452.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07971	C3BFK4_9BACI_1_96	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07971	D8QDJ5_SCHCM_240_492	100

Sequence based PCA Plot of the family - PF07971 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=505 Length=8
Motif2 Start=541 Length=11
Motif3 Start=374 Length=11
Motif4 Start=26 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay