3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07970

Details:

PFam ID : PF07970

PFam Domain Description : Endoplasmic reticulum vesicle transporter

Number of Sequence in 50% Dataset : 127

Number of Sequence in Full Dataset : 417

Average sequence length: 185.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07970	C3BFK4_9BACI_1_96	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07970	C9SI29_VERA1_143_268	100

Sequence based PCA Plot of the family - PF07970 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=232 Length=8
Motif2 Start=54 Length=8
Motif3 Start=259 Length=8
Motif4 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay