3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07969

Details:

PFam ID : PF07969

PFam Domain Description : Amidohydrolase family

Number of Sequence in 50% Dataset : 739

Number of Sequence in Full Dataset : 2165

Average sequence length: 363.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07969	C3BFK4_9BACI_1_96	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07969	Q0BT35_GRABC_227_370	96.4

Sequence based PCA Plot of the family - PF07969 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=548 Length=14
Motif2 Start=439 Length=8
Motif3 Start=315 Length=8
Motif4 Start=2 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay