3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07968

Details:

PFam ID : PF07968

PFam Domain Description : Leukocidin/Hemolysin toxin family

Number of Sequence in 50% Dataset : 36

Number of Sequence in Full Dataset : 72

Average sequence length: 204.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07968	C3BFK4_9BACI_1_96	57.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07968	Q5W8I3_STAIN_3_153	97.1

Sequence based PCA Plot of the family - PF07968 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay