3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07967

Details:

PFam ID : PF07967

PFam Domain Description : C3HC zinc finger-like

Number of Sequence in 50% Dataset : 57

Number of Sequence in Full Dataset : 125

Average sequence length: 125.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07967	B6JYN6_SCHJY_36_171	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07967	D8LF30_ECTSI_62_210	100

Sequence based PCA Plot of the family - PF07967 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=41 Length=8
Motif4 Start=120 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay