3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07966

Details:

PFam ID : PF07966

PFam Domain Description : A1 Propeptide

Number of Sequence in 50% Dataset : 12

Number of Sequence in Full Dataset : 235

Average sequence length: 28.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07966	E5LCH9_9BILA_17_43	18.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07966	Q4R000_PODSI_17_45	95.2

Sequence based PCA Plot of the family - PF07966 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay