3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07965

Details:

PFam ID : PF07965

PFam Domain Description : Integrin beta tail domain

Number of Sequence in 50% Dataset : 38

Number of Sequence in Full Dataset : 123

Average sequence length: 82.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07965	D2DSI3_9EUCA_1_38	91.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07965	E2B5Z7_9HYME_675_767	100

Sequence based PCA Plot of the family - PF07965 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=26 Length=8
Motif2 Start=1 Length=11
Motif3 Start=14 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay