3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07959

Details:

PFam ID : PF07959

PFam Domain Description : L-fucokinase

Number of Sequence in 50% Dataset : 51

Number of Sequence in Full Dataset : 96

Average sequence length: 311.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07959	D7FJB1_ECTSI_126_595	78

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07959	C3XWJ9_BRAFL_92_528	100

Sequence based PCA Plot of the family - PF07959 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=384 Length=8
Motif2 Start=15 Length=8
Motif3 Start=2 Length=8
Motif4 Start=429 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay