3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07949

Details:

PFam ID : PF07949

PFam Domain Description : YbbR-like protein

Number of Sequence in 50% Dataset : 540

Number of Sequence in Full Dataset : 994

Average sequence length: 83.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07949	C3AGF0_BACMY_1_55	39.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07949	Q8QZF5_9VIRU_246_889	100

Sequence based PCA Plot of the family - PF07949 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=24 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay