3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07947

Details:

PFam ID : PF07947

PFam Domain Description : YhhN-like protein

Number of Sequence in 50% Dataset : 162

Number of Sequence in Full Dataset : 387

Average sequence length: 183.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07947	D3B2R9_POLPA_53_286	98.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07947	C3Y448_BRAFL_35_259	99.7

Sequence based PCA Plot of the family - PF07947 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=28 Length=8
Motif4 Start=47 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay