3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07942

Details:

PFam ID : PF07942

PFam Domain Description : N2227-like protein

Number of Sequence in 50% Dataset : 63

Number of Sequence in Full Dataset : 215

Average sequence length: 242.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07942	C7PQ79_CHIPD_118_369	91.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07942	B9P8R3_POPTR_1_54	100

Sequence based PCA Plot of the family - PF07942 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=82 Length=8
Motif2 Start=32 Length=8
Motif3 Start=109 Length=8
Motif4 Start=18 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay