3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07940

Details:

PFam ID : PF07940

PFam Domain Description : Heparinase II/III-like protein

Number of Sequence in 50% Dataset : 221

Number of Sequence in Full Dataset : 646

Average sequence length: 144.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07940	D5GHT7_TUBMM_122_242	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07940	E3HC57_ILYPC_393_574	100

Sequence based PCA Plot of the family - PF07940 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=30 Length=8
Motif4 Start=72 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay