3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07935

Details:

PFam ID : PF07935

PFam Domain Description : ORF D-335-like protein

Number of Sequence in 50% Dataset : 3

Number of Sequence in Full Dataset : 47

Average sequence length: 67.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07935	B7XIZ4_ENTBH_13_188	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07935	D2PCR8_SULID_1_41	91.3

Sequence based PCA Plot of the family - PF07935 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=21 Length=8
Motif3 Start=1 Length=8
Motif4 Start=12 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay