3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07934

Details:

PFam ID : PF07934

PFam Domain Description : 8-oxoguanine DNA glycosylase, N-terminal domain

Number of Sequence in 50% Dataset : 137

Number of Sequence in Full Dataset : 354

Average sequence length: 115.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07934	B7XIZ4_ENTBH_13_188	87.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07934	Q972N8_SULTO_20_118	100

Sequence based PCA Plot of the family - PF07934 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=3 Length=8
Motif4 Start=65 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay