3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07931

Details:

PFam ID : PF07931

PFam Domain Description : Chloramphenicol phosphotransferase-like protein

Number of Sequence in 50% Dataset : 43

Number of Sequence in Full Dataset : 97

Average sequence length: 159.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07931	D3HQ80_LEGLN_5_199	69.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07931	D3HQ80_LEGLN_5_199	100

Sequence based PCA Plot of the family - PF07931 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=179 Length=8
Motif2 Start=131 Length=8
Motif3 Start=6 Length=8
Motif4 Start=168 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay