3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07927

Details:

PFam ID : PF07927

PFam Domain Description : YcfA-like protein

Number of Sequence in 50% Dataset : 100

Number of Sequence in Full Dataset : 792

Average sequence length: 55.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07927	A4YSU2_BRASO_11_64	71.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07927	F2UWI9_ACTVI_3_61	99.6

Sequence based PCA Plot of the family - PF07927 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=29 Length=11
Motif2 Start=48 Length=11
Motif3 Start=20 Length=8
Motif4 Start=3 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay