3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF07923

Details:

PFam ID : PF07923

PFam Domain Description : N1221-like protein

Number of Sequence in 50% Dataset : 53

Number of Sequence in Full Dataset : 107

Average sequence length: 265.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07923	C4R228_PICPG_119_421	71.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF07923	C4QKM1_SCHMA_18_379	100

Sequence based PCA Plot of the family - PF07923 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=11 Length=17
Motif2 Start=293 Length=8
Motif3 Start=306 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay